Everything Duplicated in Sapphire Media Player

Hi Guys, i have an issue with Sapphire - All of a sudden absiolutely EVERYTHING is duplicated and appears twice in both the Movies and TV Show Menus.

I’ve tried to establish the problem. Firstly by checking the ‘Collections’ paths which appear correct and in order. Upon closer examination hower in the locally stored movies folder (stored in the ‘front row’ folder) there appears to be a shortcut folder to the external USB drive. So when I use the scrapers to scan both externally and locally, they scan the same media files twice but via different paths therefore duplicating the information.

Have I diagnosed this problem correctly and if so how do I fix it???